PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000850m
Common NameCICLE_v10000850mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 525aa    MW: 58418.6 Da    PI: 6.6834
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000850mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.8e-07272293223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C++Cgk F+r  nL+ H+r H
  Ciclev10000850m 272 FCTICGKGFKRDANLRMHMRGH 293
                      6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-5269296No hitNo description
PROSITE profilePS5015712.03271298IPR007087Zinc finger, C2H2
SMARTSM003550.0026271293IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.9E-6272322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
SMARTSM0035553320353IPR015880Zinc finger, C2H2-like
SMARTSM0035523358380IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MDLKEGLRAE TWAKSSLAEN EMSKRISSNN PCFTDFNSQQ YQQKWEDPSI LDYDIRINPA  60
FQEFNQPPQN QSSLPCDPTN QIKNPFQMNE NLQTNKMQDW DPKAMLNNLS FLEQKIHELQ  120
DLVHLIVGRR SQILGRPDEL VAQQQQLITA DLTSIIVQLI STAGSLLPSM KHTLSAATPS  180
MGQLGQFGGV PFPPGAGLSD SVQVQNSCAK KVSNQSNPID LVGNSGTQQN HAVEEHDLKD  240
EDDADDGEQL PPGSYEILQL EKEEILAPHT HFCTICGKGF KRDANLRMHM RGHGDEYKTP  300
AALAKPHKES SSEPMLIKRY SCPYAGCKRN KDHKKFQPLK TILCVKNHYK RTHCDKSYVC  360
SRCNTKKFSV IADLKTHEKH CGKDKWLCSC GTTFSRKDKL FGHIALFQGH TPAIPLDETI  420
KGLAGPSDRR EGNEATSKIG STNFNFGSSV PNGTGVSDMD AKGNVDDPTN YFSPLNFDTC  480
NFDGFHEFPR PPFDDSENAF SFLIPGSCNY IQKTGGETSL NTLK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434627.10.0hypothetical protein CICLE_v10000850mg
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLV4T3W50.0V4T3W5_9R
STRINGVIT_18s0072g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69772644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.20.0C2H2 family protein